A map of where anime and manga are set rather than filmed, because nothing is filmed in a drawn show. 568 titles, 589 real places, 39 countries.
It has Washinomiya Shrine for Lucky Star and Hida-Furukawa Station for Your Name. It has nothing at all for Attack on Titan or One Piece, Slam Dunk is only Hiroshima, and about half the map is still just a city rather than the actual spot. (Working on it)
I have not gotten to the rest yet. If you know an exact spot, tell me and I might be able add it.
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A couple of very random locations otherwise unmarked:
The early episodes of Vinland Saga take place in Iceland, making it, I think, the only anime set there to date. I can’t remember whether they ever give a town name or not.
While most of the series takes place in London, England, one of the Moriarty the Patriot OAVs is set in Bath.
The second season of Vinland Saga mostly takes place in Denmark too.
Also, Kami no Shizuku/Drops of God has now been to the Matterhorn, California’s Napa Valley, Adelaide in Australia (with a brief labeled shot of Ayers Rock for extra), and what I think was Uyghur territory in China.
I remember the scene in Iceland! It is so cool when anime is set in Scandinavia. I will see if I can add it.